Chien-Wei (Masaki) Lin, PhD

Publications

• Temporally resolved single cell transcriptomics in a human model of amniogenesis.

  (Sekulovski N, Carleton AE, Rengarajan AA, Lin CW, Juga LN, Whorton AE, Schmidt JK, Golos TG, Taniguchi K.) bioRxiv. 2024 Aug 22 PMID: 39026707 PMCID: PMC11257495 07/19/2024

• Temporally resolved early bone morphogenetic protein-driven transcriptional cascade during human amnion specification.

  (Sekulovski N, Wettstein JC, Carleton AE, Juga LN, Taniguchi LE, Ma X, Rao S, Schmidt JK, Golos TG, Lin CW, Taniguchi K.) Elife. 2024 Jul 25;12 PMID: 39051990 PMCID: PMC11272160 SCOPUS ID: 2-s2.0-85170502786 07/26/2024

• Estrogen-related receptor alpha promotes thyroid tumor cell survival via a tumor subtype-specific regulation of target gene networks.

  (Chen W, Song YS, Lee HS, Lin CW, Lee J, Kang YE, Kim SK, Kim SY, Park YJ, Park JI.) Oncogene. 2024 Jul;43(31):2431-2446 PMID: 38937602 SCOPUS ID: 2-s2.0-85197858420 06/28/2024

• Meta-Analytic Gene-Clustering Algorithm for Integrating Multi-Omics and Multi-Study Data.

  (Kemmo Tsafack U, Ahn KW, Kwitek AE, Lin CW.) Bioengineering (Basel). 2024 Jun 08;11(6) PMID: 38927823 PMCID: PMC11201102 06/27/2024

• Monocytes in type 1 diabetes families exhibit high cytolytic activity and subset abundances that correlate with clinical progression.

  (Pant T, Lin CW, Bedrat A, Jia S, Roethle MF, Truchan NA, Ciecko AE, Chen YG, Hessner MJ.) Sci Adv. 2024 May 17;10(20):eadn2136 PMID: 38758799 PMCID: PMC11100571 SCOPUS ID: 2-s2.0-85193631768 05/17/2024

• Temporally resolved early BMP-driven transcriptional cascade during human amnion specification.

  (Sekulovski N, Wettstein JC, Carleton AE, Juga LN, Taniguchi LE, Ma X, Rao S, Schmidt JK, Golos TG, Lin CW, Taniguchi K.) bioRxiv. 2024 Mar 06 PMID: 38496419 PMCID: PMC10942271 03/18/2024

• Using a centered general linear model for detection of interactions among biomarkers.

  (Wang T, Lin CW.) Stat Methods Med Res. 2024 Mar;33(3):414-432 PMID: 38320800 SCOPUS ID: 2-s2.0-85184390679 02/07/2024

• Cellular Senescence Contributes to the Progression of Hyperoxic Bronchopulmonary Dysplasia.

  (Jing X, Jia S, Teng M, Day BW, Afolayan AJ, Jarzembowski JA, Lin CW, Hessner MJ, Pritchard KA Jr, Naylor S, Konduri GG, Teng RJ.) Am J Respir Cell Mol Biol. 2024 Feb;70(2):94-109 PMID: 37874230 SCOPUS ID: 2-s2.0-85184825553 10/24/2023

• IL-13 promotes functional recovery after myocardial infarction via direct signaling to macrophages.

  (Alvarez-Argote S, Paddock SJ, Flinn MA, Moreno CW, Knas MC, Almeida VA, Buday SL, Bakhshian Nik A, Patterson M, Chen YG, Lin CW, O'Meara CC.) JCI Insight. 2024 Jan 23;9(2) PMID: 38051583 PMCID: PMC10906228 SCOPUS ID: 2-s2.0-85183312687 12/06/2023

• A spatial sequencing atlas of age-induced changes in the lung during influenza infection.

  (Kasmani MY, Topchyan P, Brown AK, Brown RJ, Wu X, Chen Y, Khatun A, Alson D, Wu Y, Burns R, Lin CW, Kudek MR, Sun J, Cui W.) Nat Commun. 2023 Oct 18;14(1):6597 PMID: 37852965 PMCID: PMC10584893 SCOPUS ID: 2-s2.0-85174461444 10/19/2023

• Identification of Amnion Progenitor-Like Cells at the Amnion-Epiblast Boundary in the Primate Peri-Gastrula

  (.) . Sekulovski N, Juga L, Cortez CL, Czerwinski M, Whorton AE, Spence JR, Schmidt JK, Golos TG, Gumucio DL, Lin CW, Taniguchi K (2023) Developmental Cell 09/07/2023

• Temporally resolved early BMP-driven transcriptional cascade during human amnion specification (Reviewed Preprint)

  (.) . Sekulovski N, Wettstein JC, Carleton AE, Taniguchi LE, Ma X, Rao S, Schmidt JK, Golos TG, Lin CW, Taniguchi K (2023) eLife 12:RP89367 08/10/2023